PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497676.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family E2F/DP
Protein Properties Length: 473aa    MW: 51620 Da    PI: 4.7659
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.32e-26146211171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf++ll+++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+i+wkg
  XP_004497676.1 146 RYDSSLGLLTKKFINLLKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKNIKNRIHWKG 211
                     6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-28143213IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.98E-17146209IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.9E-34146211IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.5E-24148211IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.28E-39249334No hitNo description
PfamPF164214.6E-26251332IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF1440743.92E-25252334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSAGAGASDR GSPMPRESAG APIRPPLKRH LAFVSTKPPF APPDEYRSFA AVDARKVADH  60
VSEAVVVRSP LIKRKNGMNE SEGDSQKWSN SPGYSTVMNS PFKTPLSAKG GRASKSKVSK  120
EGRSCPPTPI SNAGSPSPLT PAGSCRYDSS LGLLTKKFIN LLKHAEDGIL DLNKAAETLE  180
VQKRRIYDIT NVLEGIGLIE KNIKNRIHWK GVESSTPGDV DGDISIIQGQ IQNFKVEARL  240
ADQAANDMRQ NVEMQERLRS LSEDENNQKF LFVTEEDIKG LPCFQNETLI AIKAPHGTTL  300
EVPDPEEAVD YLQRRYRIIL RSTMGPIDVY LISQFEEKFE EINGADPPTG FPLASSSGSN  360
EQLVTEMVPA ECSGKELEPQ ALLSSQAYSD LNASQEFAGG MMKIVPSDAD NDADYWLLSD  420
AEVSITDMWR TDSSVDWDGV DMLHPDFGMI SRPQTPSPGL AEAPSTVANP NLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-23141212274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0930462e-70BT093046.1 Soybean clone JCVI-FLGm-15I8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497676.10.0PREDICTED: transcription factor E2FA
SwissprotQ9FNY01e-161E2FA_ARATH; Transcription factor E2FA
TrEMBLG7IE330.0G7IE33_MEDTR; E2F transcription factor
STRINGGLYMA02G35850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-155E2F transcription factor 3